SNP Profiles of NA 26 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AG	CG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
1._RUQ_1230	_	_	CG	_	_	_	_	TT	_	CC	_	AG	_	AG
2._RUQ_1230	CC	AG	CG	TT	TT	CC	TT	TT	CC	CC	AA	AG	CT	AG
3._RUQ_1230	_	AA	CG	TT	_	_	_	TT	_	_	_	_	CT	AG
4._GC-04-021-2-03	CC	AA	CG	TT	TT	CC	TT	TT	CC	CC	AA	AG	CT	AG
5._GC-04-021-2-03	CC	AA	CG	TT	TT	CC	TT	TT	CC	CC	AA	AG	CT	AG
6._GC-04-021-2-03	CC	AA	CG	TT	TT	CC	TT	TT	CC	CC	AA	AG	CT	AG
7._GC-04-021-2-03	CC	AA	CG	TT	TT	CC	TT	TT	CC	CC	AA	AG	CT	AG
8._GC-04-021-2-03	CC	AA	CG	TT	TT	CC	TT	TT	CC	CC	AA	AG	CT	AG
9._NA_26	CC	AA	CG	TT	TT	CC	TT	TT	CC	CC	AA	AG	CT	AG
10._NA_26	CC	AA	CG	TT	TT	CC	TT	TT	CC	CC	AA	AG	CT	AG
11._NA_26	CC	AA	CG	TT	TT	CC	TT	TT	CC	CC	AA	AG	CT	AG
12._NA_26	CC	AA	CG	TT	TT	CC	TT	TT	CC	CC	AA	AG	CT	AG
13._NA_26	CC	AA	CG	TT	TT	CC	TT	TT	CC	CC	AA	AG	CT	AG
14._RUQ_1230	_	_	CG	_	_	_	_	_	_	_	_	_	CT	_
15._RUQ_1230	GG	AA	CG	AA	AA	CC	AA	AA	_	_	AA	AG	AG	AG
16._MITC-000034	GG	AA	CG	AA	AA	CC	AA	AA	_	_	AA	AG	AG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	GG	CC	TT	CC	GG	AA	CC	AC	GG	GG	CC	AC
1._RUQ_1230	_	_	_	_	_	CC	GG	AA	_	AC	GG	_	_	CC
2._RUQ_1230	CT	AA	GG	CT	CC	CC	GG	AA	CC	AC	GG	GG	CT	CC
3._RUQ_1230	_	_	_	_	CC	CC	GG	_	CC	AC	GG	GG	CT	CC
4._GC-04-021-2-03	CT	AA	GG	CT	CC	CC	GG	AA	CC	AC	GG	GG	CT	CC
5._GC-04-021-2-03	CT	AA	GG	CT	CC	CC	GG	AA	CC	AC	GG	GG	CT	CC
6._GC-04-021-2-03	CT	AA	GG	CT	CC	CC	GG	AA	CC	AC	GG	GG	CT	CC
7._GC-04-021-2-03	CT	AA	GG	CT	CC	CC	GG	AA	CC	AC	GG	GG	CT	CC
8._GC-04-021-2-03	CT	AA	GG	CT	CC	CC	GG	AA	CC	AC	GG	GG	CT	CC
9._NA_26	CT	AA	GG	CT	CC	CC	GG	AA	CC	AC	GG	GG	CT	CC
10._NA_26	CT	AA	GG	CT	CC	CC	GG	AA	CC	AC	GG	GG	CT	CC
11._NA_26	CT	AA	GG	CT	CC	CC	GG	AA	CC	AC	GG	GG	CT	CC
12._NA_26	CT	AA	GG	CT	CC	CC	GG	AA	CC	AC	GG	GG	CT	CC
13._NA_26	CT	AA	GG	CT	CC	CC	GG	AA	CC	AC	GG	GG	CT	CC
14._RUQ_1230	CT	_	_	_	CC	GG	_	_	_	AC	GG	_	_	_
15._RUQ_1230	AG	AA	GG	AG	GG	GG	CC	_	GG	AC	GG	CC	_	CC
16._MITC-000034	AG	AA	GG	AG	GG	GG	CC	_	GG	AC	GG	CC	_	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	AG	AT	CT	AG	GG	AC	CT	TT	CC	AT	CG	X_X	X_X
1._RUQ_1230	_	_	_	_	AG	_	_	_	_	AC	_	_	X_X	X_X
2._RUQ_1230	AA	GG	AT	CT	AG	CG	AA	CT	GG	AC	TT	GG	X_X	X_X
3._RUQ_1230	AA	_	AT	CT	AG	CG	AA	CT	GG	AC	_	_	X_X	X_X
4._GC-04-021-2-03	AA	GG	AT	CT	AG	CG	AA	CT	GG	AC	TT	GG	X_X	X_X
5._GC-04-021-2-03	AA	GG	AT	CT	AG	CG	AA	CT	GG	AC	TT	GG	X_X	X_X
6._GC-04-021-2-03	AA	GG	AT	CT	AG	CG	AA	CT	GG	AC	TT	GG	X_X	X_X
7._GC-04-021-2-03	AA	GG	AT	CT	AG	CG	AA	CT	GG	AC	TT	GG	X_X	X_X
8._GC-04-021-2-03	AA	GG	AT	CT	AG	CG	AA	CT	GG	AC	TT	GG	X_X	X_X
9._NA_26	AA	GG	AT	CT	AG	CG	AA	CT	GG	AC	TT	GG	X_X	X_X
10._NA_26	AA	GG	AT	CT	AG	CG	AA	CT	GG	AC	TT	GG	X_X	X_X
11._NA_26	AA	GG	AT	CT	AG	CG	AA	CT	GG	AC	TT	GG	X_X	X_X
12._NA_26	AA	GG	AT	CT	AG	CG	AA	CT	GG	AC	TT	GG	X_X	X_X
13._NA_26	AA	GG	AT	CT	AG	CG	AA	CT	GG	AC	TT	GG	X_X	X_X
14._RUQ_1230	_	_	AT	_	AG	CG	AA	CT	_	AC	_	_	X_X	X_X
15._RUQ_1230	_	GG	AT	AG	AG	CG	AA	AG	CC	AC	TT	GG	X_X	X_X
16._MITC-000034	_	GG	AT	AG	AG	CG	AA	AG	CC	AC	TT	GG	X_X	X_X

Input profile: NA_26

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5B E352 T5

Dapeng Zhang, 2016

1._NA_26 RUQ_1230

80.8 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

2._NA_26 RUQ_1230

73.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

3._NA_26 RUQ_1230

72.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

4._NA_26 GC-04-021-2-03

72.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP3

5._NA_26 GC-04-021-2-03

72.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7 > FP2

6._NA_26 GC-04-021-2-03

72.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP1

7._NA_26 GC-04-021-2-03

72.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

8._NA_26 GC-04-021-2-03

72.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

9._NA_26

72.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4203 8 > FP

Dapeng Zhang, 2016

10._NA_26

72.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4203 7 > FP

Dapeng Zhang, 2016

11._NA_26

72.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4203 6 > FP

Dapeng Zhang, 2016

12._NA_26

72.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4203 4 > FP

Dapeng Zhang, 2016

13._NA_26

72.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4203 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

14._NA_26 RUQ_1230

65.4 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: GBR207

Jocelyn De Wever et al., 2019

15._NA_26 RUQ_1230

38.6 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

16._NA_26 MITC-000034

38.6 %
35 shared markers

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USDA-SHRS, United States of America

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25